1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s364_5V6

Pp1s364_5V6


Description : col3 gene for putative COSTANS-like 3 protein COL3


Gene families : OG_42_0000725 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000725_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s364_5V6
Cluster HCCA clusters: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
102790 No alias CONSTANS-like 4 0.02 Orthogroups_2024-Update
102902 No alias CONSTANS-like 5 0.02 Orthogroups_2024-Update
A4A49_03485 No alias zinc finger protein constans-like 4 0.04 Orthogroups_2024-Update
A4A49_38110 No alias zinc finger protein constans-like 2 0.03 Orthogroups_2024-Update
A4A49_38205 No alias zinc finger protein constans-like 5 0.03 Orthogroups_2024-Update
At5g24930 No alias Zinc finger protein CONSTANS-LIKE 4... 0.02 Orthogroups_2024-Update
At5g57660 No alias Zinc finger protein CONSTANS-LIKE 5... 0.02 Orthogroups_2024-Update
Brara.A03895.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.02 Orthogroups_2024-Update
Brara.B00625.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Brara.B01196.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Brara.J01176.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Brara.J01926.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G405368 No alias CONSTANS-like 2 0.02 Orthogroups_2024-Update
Glyma.04G058900 No alias CONSTANS-like 4 0.02 Orthogroups_2024-Update
Glyma.06G059600 No alias CONSTANS-like 4 0.02 Orthogroups_2024-Update
Glyma.08G255200 No alias CONSTANS-like 2 0.02 Orthogroups_2024-Update
Glyma.13G093800 No alias CONSTANS-like 5 0.06 Orthogroups_2024-Update
Glyma.17G066600 No alias CONSTANS-like 5 0.03 Orthogroups_2024-Update
HORVU5Hr1G051230.1 No alias floral promoter *(CONSTANS) 0.04 Orthogroups_2024-Update
LOC_Os02g39710 No alias CCT/B-box zinc finger protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os06g44450 No alias CCT/B-box zinc finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g06464 No alias CCT/B-box zinc finger protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_54929g0010 No alias (at5g24930 : 142.0) CONSTANS-like 4 (COL4); FUNCTIONS... 0.02 Orthogroups_2024-Update
MA_7292g0010 No alias (at5g24930 : 245.0) CONSTANS-like 4 (COL4); FUNCTIONS... 0.02 Orthogroups_2024-Update
Potri.T016900 No alias CONSTANS-like 2 0.03 Orthogroups_2024-Update
Potri.T094400 No alias CONSTANS-like 5 0.02 Orthogroups_2024-Update
Seita.1G228800.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.04 Orthogroups_2024-Update
Seita.7G153500.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.02 Orthogroups_2024-Update
Sobic.004G211200.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Sobic.006G135100.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.02 Orthogroups_2024-Update
Sobic.010G214000.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Solyc02g089540 No alias CONSTANS 1 0.02 Orthogroups_2024-Update
Solyc07g006630 No alias CONSTANS-like protein (AHRD V3.3 *** B2MW87_SOLLC) 0.02 Orthogroups_2024-Update
Sopen02g034260 No alias CCT motif 0.04 Orthogroups_2024-Update
Sopen07g002740 No alias CCT motif 0.05 Orthogroups_2024-Update
Sopen08g002490 No alias CCT motif 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000315 Znf_B-box 45 90
IPR010402 CCT_domain 301 343
No external refs found!