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  5. Pp1s400_19V6

Pp1s400_19V6


Description : breast carcinoma amplified


Gene families : OG_42_0001797 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001797_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s400_19V6
Cluster HCCA clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G116700 No alias homolog of yeast autophagy 18 (ATG18) F 0.03 Orthogroups_2024-Update
Glyma.12G136000 No alias homolog of yeast autophagy 18 (ATG18) G 0.03 Orthogroups_2024-Update
MA_17400g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Sobic.009G133500.2 No alias component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006000 fructose metabolic process IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR022175 BCAS3 531 773
No external refs found!