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  5. Pp1s42_20V6

Pp1s42_20V6


Description : F24J7.162; RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]


Gene families : OG_42_0005036 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005036_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s42_20V6
Cluster HCCA clusters: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
Bradi5g21380 No alias nucleotide binding;nucleic acid binding;RNA binding 0.04 Orthogroups_2024-Update
Brara.A01051.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Cre16.g685200 No alias nucleotide binding;nucleic acid binding;RNA binding 0.04 Orthogroups_2024-Update
Glyma.13G032300 No alias nucleotide binding;nucleic acid binding;RNA binding 0.02 Orthogroups_2024-Update
Glyma.14G154500 No alias nucleotide binding;nucleic acid binding;RNA binding 0.02 Orthogroups_2024-Update
PSME_00000520-RA No alias (at4g19610 : 110.0) nucleotide binding;nucleic acid... 0.04 Orthogroups_2024-Update
Sobic.006G211100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen02g026570 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
evm.model.tig00000893.5 No alias (at4g19610 : 150.0) nucleotide binding;nucleic acid... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 390 460
IPR000504 RRM_dom 707 782
IPR000504 RRM_dom 816 883
IPR000504 RRM_dom 9 76
IPR000504 RRM_dom 586 646
No external refs found!