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  5. Pp1s45_280V6

Pp1s45_280V6


Description : glycine-rich rna-binding


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s45_280V6
Cluster HCCA clusters: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
140819 No alias glycine-rich RNA-binding protein 4 0.02 Orthogroups_2024-Update
At1g60650 No alias Glycine-rich RNA-binding protein RZ1B... 0.02 Orthogroups_2024-Update
At2g37510 No alias RNA-binding (RRM/RBD/RNP motifs) family protein... 0.02 Orthogroups_2024-Update
At3g08000 No alias At3g08000 [Source:UniProtKB/TrEMBL;Acc:Q9SFB4] 0.02 Orthogroups_2024-Update
At4g13850 No alias Glycine-rich RNA-binding protein 2, mitochondrial... 0.03 Orthogroups_2024-Update
At4g39260 No alias Glycine-rich RNA-binding protein 8... 0.02 Orthogroups_2024-Update
At5g61030 No alias GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5] 0.03 Orthogroups_2024-Update
Bradi1g12787 No alias cold, circadian rhythm, and RNA binding 1 0.02 Orthogroups_2024-Update
Bradi1g55020 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Bradi4g06840 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
Brara.C04224.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
Brara.H00482.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
Brara.I00645.1 No alias RNA editing factor *(ORRM3) 0.02 Orthogroups_2024-Update
Brara.K01454.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.04G012700 No alias cold, circadian rhythm, and rna binding 2 0.03 Orthogroups_2024-Update
Glyma.06G012600 No alias cold, circadian rhythm, and rna binding 2 0.02 Orthogroups_2024-Update
Glyma.18G266500 No alias glycine-rich RNA-binding protein 3 0.04 Orthogroups_2024-Update
HORVU5Hr1G002150.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os07g08960 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g17454 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
MA_1460g0010 No alias (at1g73530 : 89.4) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
MA_168323g0010 No alias (at1g60650 : 142.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
Mp1g21200.1 No alias RNA editing factor (ORRM) 0.02 Orthogroups_2024-Update
PSME_00047208-RA No alias (at5g61030 : 152.0) encodes a glycine-rich RNA binding... 0.02 Orthogroups_2024-Update
PSME_00049163-RA No alias (at3g23830 : 94.7) encodes a glycine-rich RNA binding... 0.03 Orthogroups_2024-Update
PSME_00055596-RA No alias (p49310|grp1_sinal : 142.0) Glycine-rich RNA-binding... 0.02 Orthogroups_2024-Update
Potri.001G319800 No alias glycine-rich RNA-binding protein 2 0.03 Orthogroups_2024-Update
Potri.001G319900 No alias glycine-rich RNA-binding protein 2 0.03 Orthogroups_2024-Update
Potri.009G116400 No alias cold, circadian rhythm, and RNA binding 1 0.04 Orthogroups_2024-Update
Seita.2G381300.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
Seita.3G357800.1 No alias RNA editing factor *(ORRM3) 0.02 Orthogroups_2024-Update
Seita.5G427300.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Sobic.001G022600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G366800.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Sobic.008G103900.1 No alias RNA editing factor *(ORRM3) 0.02 Orthogroups_2024-Update
Solyc01g109660 No alias meloidogyne-induced giant cell protein DB275 0.02 Orthogroups_2024-Update
Solyc07g063900 No alias RNA binding protein, putative (AHRD V3.3 *-* B9SY46_RICCO) 0.02 Orthogroups_2024-Update
Solyc10g047130 No alias Glycine-rich RNA-binding protein (AHRD V3.3 *** A0A0B0NTU5_GOSAR) 0.03 Orthogroups_2024-Update
Solyc10g081180 No alias RNA-binding protein (AHRD V3.3 *-* Q941H9_TOBAC) 0.03 Orthogroups_2024-Update
Solyc10g084630 No alias RNA-binding family protein (AHRD V3.3 *** A0A061ET74_THECC) 0.02 Orthogroups_2024-Update
Sopen02g033510 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
Sopen05g032250 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
Sopen09g035220 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
evm.model.tig00000826.12 No alias (at3g23830 : 98.2) encodes a glycine-rich RNA binding... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Predicted GO
MF GO:0004424 imidazoleglycerol-phosphate dehydratase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006788 heme oxidation IEP Predicted GO
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP Predicted GO
MF GO:0016681 oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 44 114
No external refs found!