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Pp1s45_2V6


Description : chromatin remodeling complex subunit


Gene families : OG_42_0006128 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006128_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s45_2V6
Cluster HCCA clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Bradi1g62320 No alias INO80 ortholog 0.01 Orthogroups_2024-Update
Potri.016G043500 No alias INO80 ortholog 0.02 Orthogroups_2024-Update
Seita.9G402800.1 No alias ATPase component *(Ino80) of chromatin remodelling complex 0.01 Orthogroups_2024-Update
Solyc04g016370 No alias DNA helicase INO80-like protein (AHRD V3.3 *** AT3G57300.4) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000330 SNF2_N 653 940
IPR020838 DBINO 405 535
IPR001650 Helicase_C 1287 1396
No external refs found!