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  5. Pp1s47_44V6

Pp1s47_44V6


Description : chromatin remodeling complex subunit


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s47_44V6
Cluster HCCA clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
A4A49_05437 No alias chd3-type chromatin-remodeling factor pickle 0.02 Orthogroups_2024-Update
Cre03.g162701 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
LOC_Os05g05230 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_42406g0010 No alias (at5g66750 : 700.0) Protein is similar to SWI2/SNF2... 0.02 Orthogroups_2024-Update
PSME_00020446-RA No alias (at2g44980 : 160.0) SNF2 domain-containing protein /... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0004677 DNA-dependent protein kinase activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 1432 1544
IPR000313 PWWP_dom 259 332
IPR023780 Chromo_domain 1021 1055
IPR019787 Znf_PHD-finger 533 576
IPR000330 SNF2_N 1126 1407
No external refs found!