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  5. Solyc12g006480

Solyc12g006480


Description : Nuclear pore complex Nup205-like protein (AHRD V3.3 *** G7L0K5_MEDTR)


Gene families : OG_42_0004816 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004816_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g006480
Cluster HCCA clusters: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
439663 No alias Protein of unknown function (DUF3414) 0.02 Orthogroups_2024-Update
At5g51200 No alias Protein of unknown function (DUF3414) [Source:TAIR;Acc:AT5G51200] 0.03 Orthogroups_2024-Update
Bradi3g07490 No alias Protein of unknown function (DUF3414) 0.03 Orthogroups_2024-Update
Cre13.g578100 No alias Protein of unknown function (DUF3414) 0.02 Orthogroups_2024-Update
Mp6g01090.1 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.02 Orthogroups_2024-Update
Pp1s201_65V6 No alias MWD22.15; expressed protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.1G044300.1 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) 0.04 Orthogroups_2024-Update
Sobic.004G085000.1 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) 0.02 Orthogroups_2024-Update
Sopen12g002420 No alias Protein of unknown function (DUF3414) 0.03 Orthogroups_2024-Update
evm.model.tig00000880.31 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005801 cis-Golgi network IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR021827 Nup186/Nup192/Nup205 452 1618
IPR021827 Nup186/Nup192/Nup205 28 358
No external refs found!