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  5. Pp1s48_103V6

Pp1s48_103V6


Description : 40s ribosomal protein sa


Gene families : OG_42_0001668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001668_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s48_103V6
Cluster HCCA clusters: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
36118 No alias 40s ribosomal protein SA 0.09 Orthogroups_2024-Update
At3g04770 No alias 40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3] 0.02 Orthogroups_2024-Update
Bradi1g20880 No alias 40s ribosomal protein SA B 0.1 Orthogroups_2024-Update
Bradi1g23780 No alias 40s ribosomal protein SA B 0.11 Orthogroups_2024-Update
Bradi1g60310 No alias 40s ribosomal protein SA B 0.1 Orthogroups_2024-Update
Bradi1g72480 No alias 40s ribosomal protein SA B 0.16 Orthogroups_2024-Update
Brara.B02024.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Brara.D01465.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Brara.G02358.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Brara.G03124.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.25 Orthogroups_2024-Update
Cre10.g432800 No alias 40s ribosomal protein SA B 0.02 Orthogroups_2024-Update
GRMZM2G092719 No alias 40s ribosomal protein SA B 0.05 Orthogroups_2024-Update
GRMZM2G126821 No alias 40s ribosomal protein SA B 0.08 Orthogroups_2024-Update
GRMZM2G145308 No alias 40s ribosomal protein SA B 0.06 Orthogroups_2024-Update
GRMZM2G159237 No alias 40s ribosomal protein SA B 0.05 Orthogroups_2024-Update
Glyma.07G043800 No alias 40s ribosomal protein SA B 0.11 Orthogroups_2024-Update
Glyma.08G159800 No alias 40s ribosomal protein SA B 0.12 Orthogroups_2024-Update
Glyma.15G267100 No alias 40s ribosomal protein SA B 0.07 Orthogroups_2024-Update
Glyma.16G012200 No alias 40s ribosomal protein SA B 0.07 Orthogroups_2024-Update
HORVU2Hr1G030880.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
HORVU4Hr1G077240.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
LOC_Os03g08440 No alias ribosomal protein S2, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g26290.1 No alias component RPSa of SSU proteome 0.07 Orthogroups_2024-Update
Potri.001G164000 No alias 40s ribosomal protein SA 0.05 Orthogroups_2024-Update
Potri.003G071200 No alias 40s ribosomal protein SA B 0.13 Orthogroups_2024-Update
Potri.012G117600 No alias 40s ribosomal protein SA B 0.06 Orthogroups_2024-Update
Potri.015G112900 No alias 40s ribosomal protein SA 0.03 Orthogroups_2024-Update
Seita.2G389700.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Seita.9G371600.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Seita.9G517100.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Sobic.002G374900.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Sobic.002G375100.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Sobic.005G229300.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Solyc03g019780 No alias 40S ribosomal protein SA (AHRD V3.3 *** K4BEV0_SOLLC) 0.14 Orthogroups_2024-Update
Solyc06g072120 No alias 40S ribosomal protein SA (AHRD V3.3 *** K4C8T4_SOLLC) 0.12 Orthogroups_2024-Update
Sopen03g029850 No alias Ribosomal protein S2 0.2 Orthogroups_2024-Update
Sopen06g028410 No alias Ribosomal protein S2 0.1 Orthogroups_2024-Update
evm.model.contig_4456.25 No alias (o22518|rssa_soybn : 282.0) 40S ribosomal protein SA... 0.19 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 106 173
IPR001865 Ribosomal_S2 9 102
No external refs found!