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  5. Pp1s52_170V6

Pp1s52_170V6


Description : 40s ribosomal protein s4-like


Gene families : OG_42_0004110 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s52_170V6
Cluster HCCA clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Brara.B00620.1 No alias SSU processome assembly factor *(IMP3) 0.02 Orthogroups_2024-Update
evm.model.tig00020510.74 No alias (at5g15750 : 216.0) Alpha-L RNA-binding motif/Ribosomal... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
MF GO:0019843 rRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0017003 protein-heme linkage IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 3 62
IPR002942 S4_RNA-bd 107 153
No external refs found!