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  5. Pp1s54_314V6

Pp1s54_314V6


Description : snf2-family atp dependent chromatin remodeling factor snf21


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s54_314V6
Cluster HCCA clusters: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
A4A49_50225 No alias chromatin structure-remodeling complex protein syd 0.03 Orthogroups_2024-Update
Glyma.01G073400 No alias SNF2 domain-containing protein / helicase... 0.03 Orthogroups_2024-Update
LOC_Os05g05230 No alias expressed protein 0.02 Orthogroups_2024-Update
PSME_00015826-RA No alias (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.02 Orthogroups_2024-Update
PSME_00036208-RA No alias (at2g28290 : 200.0) Encodes a SWI2/SNF2-like protein in... 0.06 Orthogroups_2024-Update
evm.model.contig_2672.1 No alias (at2g25170 : 447.0) Encodes a SWI/SWF nuclear-localized... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0042393 histone binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR029295 SnAC 1061 1128
IPR001650 Helicase_C 858 971
IPR000330 SNF2_N 558 837
No external refs found!