Solyc12g010350

Description : 60S ribosomal protein L39 (AHRD V3.3 *** RL39_MAIZE)

Gene families : OG_42_0002686 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002686_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc12g010350
Cluster	HCCA clusters: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
125075	No alias	Ribosomal protein L39 family protein	0.04	Orthogroups_2024-Update
228490	No alias	Ribosomal protein L39 family protein	0.04	Orthogroups_2024-Update
At2g25210	No alias	Ribosomal protein L39 family protein [Source:TAIR;Acc:AT2G25210]	0.04	Orthogroups_2024-Update
GRMZM2G411764	No alias	Ribosomal protein L39 family protein	0.09	Orthogroups_2024-Update
LOC_Os02g55370	No alias	60S ribosomal protein L39, putative, expressed	0.08	Orthogroups_2024-Update
LOC_Os06g08320	No alias	60S ribosomal protein L39, putative, expressed	0.07	Orthogroups_2024-Update
PSME_00038050-RA	No alias	(p51426\|rl39_orysa : 108.0) 60S ribosomal protein L39 -...	0.17	Orthogroups_2024-Update
Potri.006G188500	No alias	Ribosomal protein L39 family protein	0.05	Orthogroups_2024-Update
Potri.018G022100	No alias	Ribosomal protein L39 family protein	0.1	Orthogroups_2024-Update
Potri.018G112301	No alias	Ribosomal protein L39 family protein	0.07	Orthogroups_2024-Update
Pp1s104_75V6	No alias	60s ribosomal protein l39	0.17	Orthogroups_2024-Update
Pp1s89_150V6	No alias	60S ribosomal protein L39...	0.21	Orthogroups_2024-Update
Seita.1G351900.1	No alias	component *(eL39) of large ribosomal-subunit (LSU) proteome	0.12	Orthogroups_2024-Update
Seita.6G104600.1	No alias	component *(eL39) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Sopen07g001180	No alias	Ribosomal L39 protein	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000077	Ribosomal_L39	9	49

External Links

No external refs found!

Solyc12g010350

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation