Pp1s63_162V6

Description : 60s ribosomal protein

Gene families : OG_42_0002020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002020_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s63_162V6
Cluster	HCCA clusters: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method
166650	No alias	Ribosomal protein L13 family protein	0.15	Orthogroups_2024-Update
A4A49_14824	No alias	60s ribosomal protein l13a-4	0.05	Orthogroups_2024-Update
A4A49_55645	No alias	60s ribosomal protein l13a-4	0.17	Orthogroups_2024-Update
At3g24830	No alias	60S ribosomal protein L13a-2...	0.05	Orthogroups_2024-Update
At4g13170	No alias	60S ribosomal protein L13a-3...	0.13	Orthogroups_2024-Update
Bradi1g08260	No alias	Ribosomal protein L13 family protein	0.13	Orthogroups_2024-Update
Bradi1g59280	No alias	Ribosomal protein L13 family protein	0.07	Orthogroups_2024-Update
Brara.B03455.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.21	Orthogroups_2024-Update
Brara.C03976.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.24	Orthogroups_2024-Update
Brara.F02982.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.26	Orthogroups_2024-Update
Brara.G00660.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.27	Orthogroups_2024-Update
Brara.I00372.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
Brara.I01172.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Cre12.g532550	No alias	Ribosomal protein L13 family protein	0.28	Orthogroups_2024-Update
Glyma.08G353900	No alias	Ribosomal protein L13 family protein	0.09	Orthogroups_2024-Update
Glyma.08G354000	No alias	Ribosomal protein L13 family protein	0.13	Orthogroups_2024-Update
Glyma.09G024000	No alias	Ribosomal protein L13 family protein	0.3	Orthogroups_2024-Update
HORVU2Hr1G063880.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
HORVU5Hr1G096060.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Kfl00360_0020	kfl00360_0020_v1.1	(at3g07110 : 303.0) Ribosomal protein L13 family...	0.1	Orthogroups_2024-Update
LOC_Os03g54890	No alias	ribosomal protein L13, putative, expressed	0.02	Orthogroups_2024-Update
MA_186340g0010	No alias	(at3g24830 : 331.0) Ribosomal protein L13 family...	0.1	Orthogroups_2024-Update
Mp2g08690.1	No alias	component RPL13a of LSU proteome component	0.08	Orthogroups_2024-Update
Mp4g15790.1	No alias	component RPL13a of LSU proteome component	0.08	Orthogroups_2024-Update
PSME_00002229-RA	No alias	(at3g24830 : 323.0) Ribosomal protein L13 family...	0.12	Orthogroups_2024-Update
Potri.002G242600	No alias	Ribosomal protein L13 family protein	0.1	Orthogroups_2024-Update
Potri.017G054600	No alias	Ribosomal protein L13 family protein	0.08	Orthogroups_2024-Update
Seita.2G002600.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Seita.9G087700.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.28	Orthogroups_2024-Update
Sobic.001G085400.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.29	Orthogroups_2024-Update
Sobic.009G022400.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.3	Orthogroups_2024-Update
Solyc05g053670	No alias	60S ribosomal protein L13a-like protein (AHRD V3.3 ***...	0.24	Orthogroups_2024-Update
Solyc09g091740	No alias	60S ribosomal protein L13a-like protein (AHRD V3.3 ***...	0.26	Orthogroups_2024-Update
Solyc12g098330	No alias	60S ribosomal protein L13a-like protein (AHRD V3.3 ***...	0.25	Orthogroups_2024-Update
Sopen05g032170	No alias	Ribosomal protein L13	0.34	Orthogroups_2024-Update
Sopen09g034630	No alias	Ribosomal protein L13	0.31	Orthogroups_2024-Update
Sopen12g033110	No alias	Ribosomal protein L13	0.2	Orthogroups_2024-Update
evm.model.contig_3478.11	No alias	(at3g24830 : 235.0) Ribosomal protein L13 family...	0.31	Orthogroups_2024-Update
evm.model.tig00000792.29	No alias	(at3g24830 : 242.0) Ribosomal protein L13 family...	0.09	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	12	120

External Links

No external refs found!

Pp1s63_162V6

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation