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  5. Pp1s65_183V6

Pp1s65_183V6


Description : chromatin remodeling complex subunit


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s65_183V6
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
A4A49_27543 No alias putative atp-dependent dna helicase chr12 0.01 Orthogroups_2024-Update
A4A49_56777 No alias chd3-type chromatin-remodeling factor pickle 0.02 Orthogroups_2024-Update
Pp1s166_101V6 No alias chromodomain helicase dna binding protein 6 0.01 Orthogroups_2024-Update
Sobic.009G040600.1 No alias SMARCA component *(SYD/BRM/MINU) 0.01 Orthogroups_2024-Update
Solyc02g062780 No alias chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1) 0.03 Orthogroups_2024-Update
Solyc06g065730 No alias chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
evm.model.tig00000350.9 No alias (at2g25170 : 212.0) Encodes a SWI/SWF nuclear-localized... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0045765 regulation of angiogenesis IEP Predicted GO
BP GO:0050793 regulation of developmental process IEP Predicted GO
BP GO:0051239 regulation of multicellular organismal process IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
BP GO:1901342 regulation of vasculature development IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
BP GO:2000026 regulation of multicellular organismal development IEP Predicted GO
InterPro domains Description Start Stop
IPR000330 SNF2_N 252 541
IPR001650 Helicase_C 564 676
No external refs found!