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  5. Pp1s69_14V6

Pp1s69_14V6


Description : superkiller viralicidic activity 2-like 2


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s69_14V6
Cluster HCCA clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
A4A49_05892 No alias dexh-box atp-dependent rna helicase dexh11 0.02 Orthogroups_2024-Update
A4A49_16214 No alias dexh-box atp-dependent rna helicase dexh9 0.03 Orthogroups_2024-Update
Bradi4g24170 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Brara.A02352.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.02 Orthogroups_2024-Update
Cre02.g117900 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G028060.16 No alias RNA helicase component *(HEN2) of Nuclear Exosome... 0.05 Orthogroups_2024-Update
HORVU7Hr1G001080.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.02 Orthogroups_2024-Update
LOC_Os02g06500 No alias DSHCT domain containing protein, expressed 0.04 Orthogroups_2024-Update
Seita.4G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.07 Orthogroups_2024-Update
Sobic.003G042400.1 No alias RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 Orthogroups_2024-Update
Sobic.010G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.05 Orthogroups_2024-Update
Solyc01g103080 No alias ATP-dependent RNA helicase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen05g027830 No alias rRNA-processing arch domain 0.08 Orthogroups_2024-Update
evm.model.tig00020723.108 No alias (at1g59760 : 938.0) RNA helicase, ATP-dependent,... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
MF GO:0009029 tetraacyldisaccharide 4'-kinase activity IEP Predicted GO
BP GO:0009245 lipid A biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046493 lipid A metabolic process IEP Predicted GO
BP GO:1901269 lipooligosaccharide metabolic process IEP Predicted GO
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 91 238
IPR001650 Helicase_C 379 484
IPR012961 Ski2_C 840 1009
IPR025696 rRNA_proc-arch_dom 538 811
No external refs found!