1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s6_137V6

Pp1s6_137V6


Description : rna binding


Gene families : OG_42_0000547 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s6_137V6
Cluster HCCA clusters: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
A4A49_26450 No alias hypothetical protein 0.02 Orthogroups_2024-Update
LOC_Os07g41180 No alias RNA-binding protein-like, putative, expressed 0.02 Orthogroups_2024-Update
MA_15773g0010 No alias (at5g43960 : 216.0) Nuclear transport factor 2 (NTF2)... 0.05 Orthogroups_2024-Update
PSME_00035817-RA No alias (at5g60980 : 275.0) Nuclear transport factor 2 (NTF2)... 0.02 Orthogroups_2024-Update
Seita.1G165100.1 No alias mRNA endoribonuclease *(G3BP) 0.02 Orthogroups_2024-Update
Seita.9G362600.1 No alias mRNA endoribonuclease *(G3BP) 0.02 Orthogroups_2024-Update
Sobic.001G335500.1 No alias mRNA endoribonuclease *(G3BP) 0.03 Orthogroups_2024-Update
Sobic.002G359900.1 No alias mRNA endoribonuclease *(G3BP) 0.02 Orthogroups_2024-Update
Sobic.006G041100.2 No alias mRNA endoribonuclease *(G3BP) 0.02 Orthogroups_2024-Update
Solyc10g083060 No alias Nuclear transport factor 2 family protein with RNA... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 315 381
IPR002075 NTF2 19 137
No external refs found!