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  5. Pp1s84_82V6

Pp1s84_82V6


Description : pectate lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s84_82V6
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
407495 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_12542 No alias pectate lyase 0.03 Orthogroups_2024-Update
A4A49_16129 No alias putative pectate lyase 18 0.03 Orthogroups_2024-Update
A4A49_18000 No alias putative pectate lyase 10 0.03 Orthogroups_2024-Update
A4A49_24630 No alias putative pectate lyase 3 0.02 Orthogroups_2024-Update
A4A49_26358 No alias putative pectate lyase p18 0.04 Orthogroups_2024-Update
A4A49_31246 No alias putative pectate lyase 12 0.02 Orthogroups_2024-Update
A4A49_35525 No alias putative pectate lyase 16 0.03 Orthogroups_2024-Update
At1g14420 No alias Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2] 0.02 Orthogroups_2024-Update
At2g02720 No alias Probable pectate lyase 6 [Source:UniProtKB/Swiss-Prot;Acc:O64510] 0.02 Orthogroups_2024-Update
At3g53190 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8] 0.03 Orthogroups_2024-Update
Brara.G02558.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.H01597.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Brara.I00410.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.K00935.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.04G173900 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
Glyma.06G174700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G244800 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
Glyma.13G145900 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G011200 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G020200 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
MA_101171g0010 No alias (at1g67750 : 487.0) Pectate lyase family protein;... 0.02 Orthogroups_2024-Update
MA_10433252g0010 No alias (at3g24670 : 194.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_10437227g0020 No alias (at4g13710 : 576.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_29814g0010 No alias (at4g13710 : 122.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_97947g0010 No alias (at1g67750 : 510.0) Pectate lyase family protein;... 0.02 Orthogroups_2024-Update
PSME_00000524-RA No alias (at4g24780 : 590.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00012211-RA No alias (at5g63180 : 515.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00019558-RA No alias (at4g13710 : 625.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
PSME_00019824-RA No alias (at1g67750 : 587.0) Pectate lyase family protein;... 0.04 Orthogroups_2024-Update
PSME_00020782-RA No alias (at5g63180 : 492.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00023843-RA No alias (at4g13710 : 610.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00029400-RA No alias (at5g63180 : 504.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.001G052300 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G182200 No alias Pectate lyase family protein 0.04 Orthogroups_2024-Update
Potri.014G178100 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.015G087800 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s61_217V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Seita.9G233400.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Sobic.003G322800.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Sobic.004G091000.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Sobic.010G034200.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Solyc02g067450 No alias Pectate lyase (AHRD V3.3 *** M1A9L8_SOLTU) 0.02 Orthogroups_2024-Update
Solyc03g111690 No alias Pectate lyase family protein (AHRD V3.3 *** AT1G67750.1) 0.02 Orthogroups_2024-Update
Solyc09g061890 No alias Pectate lyase (AHRD V3.3 *** M1BAL5_SOLTU) 0.02 Orthogroups_2024-Update
Sopen02g016600 No alias Pectate lyase 0.02 Orthogroups_2024-Update
Sopen02g038070 No alias Pectate lyase 0.02 Orthogroups_2024-Update
Sopen05g033960 No alias Pectate lyase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006166 purine ribonucleoside salvage IEP Predicted GO
BP GO:0006190 inosine salvage IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008252 nucleotidase activity IEP Predicted GO
MF GO:0008253 5'-nucleotidase activity IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0043094 cellular metabolic compound salvage IEP Predicted GO
BP GO:0043101 purine-containing compound salvage IEP Predicted GO
BP GO:0043174 nucleoside salvage IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046102 inosine metabolic process IEP Predicted GO
BP GO:0046103 inosine biosynthetic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0050483 IMP 5'-nucleotidase activity IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 177 347
No external refs found!