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  5. Pp1s85_186V6

Pp1s85_186V6


Description : beta chain


Gene families : OG_42_0000212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s85_186V6
Cluster HCCA clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
At5g44340 No alias Tubulin beta-4 chain [Source:UniProtKB/Swiss-Prot;Acc:P24636] 0.02 Orthogroups_2024-Update
Bradi2g21340 No alias beta-6 tubulin 0.02 Orthogroups_2024-Update
Bradi2g52790 No alias beta-6 tubulin 0.02 Orthogroups_2024-Update
Solyc06g076640 No alias Tubulin beta chain (AHRD V3.3 *** M1CZM0_SOLTU) 0.02 Orthogroups_2024-Update
Sopen10g031450 No alias Tubulin/FtsZ family, GTPase domain 0.02 Orthogroups_2024-Update
evm.model.contig_2073.5 No alias (p37832|tbb7_orysa : 682.0) Tubulin beta-7 chain (Beta-7... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003008 Tubulin_FtsZ_GTPase 3 211
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 261 382
No external refs found!