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  5. Pp1s98_77V6

Pp1s98_77V6


Description : F3I6.27; armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana]


Gene families : OG_42_0003264 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s98_77V6
Cluster HCCA clusters: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
At1g67530 No alias RING-type E3 ubiquitin transferase... 0.03 Orthogroups_2024-Update
Pp1s509_10V6 No alias armadillo beta-catenin repeat family protein u-box... 0.04 Orthogroups_2024-Update
Seita.5G416600.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0016567 protein ubiquitination IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0033926
  		•  glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
    BP GO:0042221 response to chemical IEP Predicted GO
    BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
    BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
    BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
    MF GO:0070279 vitamin B6 binding IEP Predicted GO
    BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
    MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
    BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
    BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
    BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
    InterPro domains Description Start Stop
    IPR000225 Armadillo 652 685
    IPR000225 Armadillo 694 732
    IPR003613 Ubox_domain 393 464
    No external refs found!