1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g039120

Solyc12g039120


Description : 40S ribosomal protein S19-like (AHRD V3.3 *** Q2VCJ6_SOLTU)


Gene families : OG_42_0001908 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001908_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g039120
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
153225 No alias Ribosomal protein S19e family protein 0.17 Orthogroups_2024-Update
A4A49_38035 No alias 40s ribosomal protein s19-3 0.13 Orthogroups_2024-Update
A4A49_60647 No alias 40s ribosomal protein s19-3 0.13 Orthogroups_2024-Update
Bradi3g56527 No alias Ribosomal protein S19e family protein 0.14 Orthogroups_2024-Update
Bradi4g08690 No alias Ribosomal protein S19e family protein 0.07 Orthogroups_2024-Update
Brara.A03915.1 No alias component *(eS19) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Brara.C02969.1 No alias component *(eS19) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Brara.C04231.1 No alias component *(eS19) of small ribosomal-subunit (SSU) proteome 0.25 Orthogroups_2024-Update
Brara.E03604.1 No alias component *(eS19) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.I00650.1 No alias component *(eS19) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Cre02.g106600 No alias Ribosomal protein S19e family protein 0.2 Orthogroups_2024-Update
Glyma.04G132900 No alias Ribosomal protein S19e family protein 0.13 Orthogroups_2024-Update
Glyma.11G158500 No alias Ribosomal protein S19e family protein 0.12 Orthogroups_2024-Update
Glyma.13G057500 No alias Ribosomal protein S19e family protein 0.08 Orthogroups_2024-Update
Glyma.19G028700 No alias Ribosomal protein S19e family protein 0.13 Orthogroups_2024-Update
HORVU5Hr1G052240.6 No alias component *(eS19) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Kfl00035_0260 kfl00035_0260_v1.1 (at3g02080 : 166.0) Ribosomal protein S19e family... 0.11 Orthogroups_2024-Update
LOC_Os03g31090 No alias 40S ribosomal protein S19, putative, expressed 0.03 Orthogroups_2024-Update
MA_10427917g0010 No alias (at3g02080 : 247.0) Ribosomal protein S19e family... 0.07 Orthogroups_2024-Update
MA_10427917g0020 No alias (at5g15520 : 163.0) Ribosomal protein S19e family... 0.02 Orthogroups_2024-Update
Mp1g27380.1 No alias component RPS19 of SSU proteome 0.12 Orthogroups_2024-Update
PSME_00007653-RA No alias (at5g15520 : 237.0) Ribosomal protein S19e family... 0.14 Orthogroups_2024-Update
PSME_00016304-RA No alias (at3g02080 : 241.0) Ribosomal protein S19e family... 0.02 Orthogroups_2024-Update
Potri.015G056100 No alias Ribosomal protein S19e family protein 0.1 Orthogroups_2024-Update
Potri.017G092200 No alias Ribosomal protein S19e family protein 0.1 Orthogroups_2024-Update
Pp1s21_363V6 No alias 40s ribosomal protein s19 0.26 Orthogroups_2024-Update
Pp1s34_111V6 No alias 40s ribosomal protein s19 0.29 Orthogroups_2024-Update
Pp1s54_217V6 No alias 40s ribosomal protein s19 0.13 Orthogroups_2024-Update
Pp1s84_153V6 No alias 40s ribosomal protein s19 0.26 Orthogroups_2024-Update
Pp1s98_182V6 No alias 40s ribosomal protein s19 0.21 Orthogroups_2024-Update
Seita.2G151200.1 No alias component *(eS19) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Seita.9G361400.1 No alias component *(eS19) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
Seita.9G575800.1 No alias component *(eS19) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Sobic.001G334300.1 No alias component *(eS19) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Sobic.007G178600.1 No alias component *(eS19) of small ribosomal-subunit (SSU) proteome 0.25 Orthogroups_2024-Update
Sopen03g034360 No alias Ribosomal protein S19e 0.26 Orthogroups_2024-Update
Sopen12g019420 No alias Ribosomal protein S19e 0.26 Orthogroups_2024-Update
evm.model.contig_3407.10 No alias (at3g02080 : 155.0) Ribosomal protein S19e family... 0.3 Orthogroups_2024-Update
evm.model.tig00021017.6 No alias (at3g02080 : 183.0) Ribosomal protein S19e family... 0.21 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001266 Ribosomal_S19e 6 140
No external refs found!