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  5. Solyc12g056490

Solyc12g056490


Description : WD40 repeat-containing protein (AHRD V3.3 *** A0A103XFY3_CYNCS)


Gene families : OG_42_0002050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002050_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g056490
Cluster HCCA clusters: Cluster_283


Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Predicted GO
BP GO:0009245 lipid A biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0017007 protein-bilin linkage IEP Predicted GO
BP GO:0017009 protein-phycocyanobilin linkage IEP Predicted GO
MF GO:0019213 deacetylase activity IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046493 lipid A metabolic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901269 lipooligosaccharide metabolic process IEP Predicted GO
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 196 267
IPR001680 WD40_repeat 331 371
IPR001680 WD40_repeat 420 456
IPR001680 WD40_repeat 291 326
No external refs found!