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  5. Solyc12g088230

Solyc12g088230


Description : mitochondrial malate dehydrogenase


Gene families : OG_42_0000192 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000192_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g088230
Cluster HCCA clusters: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
A4A49_09861 No alias csc1-like protein rxw8 0.09 Orthogroups_2024-Update
A4A49_15965 No alias csc1-like protein erd4 0.04 Orthogroups_2024-Update
Bradi1g12670 No alias lipases;hydrolases, acting on ester bonds 0.02 Orthogroups_2024-Update
Brara.A01995.1 No alias calcium-permeable channel *(OSCA) 0.05 Orthogroups_2024-Update
Brara.A02367.1 No alias calcium-permeable channel *(OSCA) 0.04 Orthogroups_2024-Update
Brara.C02721.1 No alias calcium-permeable channel *(OSCA) 0.03 Orthogroups_2024-Update
Brara.H00598.1 No alias calcium-permeable channel *(OSCA) 0.03 Orthogroups_2024-Update
Brara.H00805.1 No alias calcium-permeable channel *(OSCA) 0.05 Orthogroups_2024-Update
Glyma.17G232235 No alias lipases;hydrolases, acting on ester bonds 0.04 Orthogroups_2024-Update
HORVU1Hr1G004230.1 No alias calcium-permeable channel *(OSCA) 0.05 Orthogroups_2024-Update
LOC_Os12g43720 No alias early-responsive to dehydration protein-related,... 0.03 Orthogroups_2024-Update
MA_10435227g0010 No alias (at4g02900 : 534.0) ERD (early-responsive to dehydration... 0.02 Orthogroups_2024-Update
Pp1s46_172V6 No alias early responsive to dehydration protein 0.02 Orthogroups_2024-Update
Pp1s96_240V6 No alias early responsive to dehydration protein 0.02 Orthogroups_2024-Update
Seita.2G031800.1 No alias calcium-permeable channel *(OSCA) 0.02 Orthogroups_2024-Update
Seita.3G120200.1 No alias calcium-permeable channel *(OSCA) 0.04 Orthogroups_2024-Update
Seita.3G403000.1 No alias calcium-permeable channel *(OSCA) 0.03 Orthogroups_2024-Update
Sobic.001G282700.1 No alias calcium-permeable channel *(OSCA) 0.02 Orthogroups_2024-Update
Sobic.003G181600.1 No alias calcium-permeable channel *(OSCA) 0.02 Orthogroups_2024-Update
Sopen12g030230 No alias Domain of unknown function DUF221 0.14 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003951 NAD+ kinase activity IEP Predicted GO
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Predicted GO
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006741 NADP biosynthetic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006817 phosphate ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003864 RSN1_7TM 368 633
IPR032880 Csc1_N 6 165
IPR027815 PHM7_cyt 187 357
No external refs found!