Solyc12g098840

Description : ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR)

Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc12g098840
Cluster	HCCA clusters: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
229984	No alias	ABC transporter family protein	0.03	Orthogroups_2024-Update
231714	No alias	P-glycoprotein 17	0.02	Orthogroups_2024-Update
Brara.G01961.1	No alias	subfamily ABCB transporter	0.02	Orthogroups_2024-Update
Glyma.10G055000	No alias	ATP binding cassette subfamily B1	0.02	Orthogroups_2024-Update
Glyma.13G118500	No alias	P-glycoprotein 11	0.03	Orthogroups_2024-Update
Glyma.13G118900	No alias	P-glycoprotein 11	0.03	Orthogroups_2024-Update
Glyma.17G041300	No alias	ATP binding cassette subfamily B4	0.02	Orthogroups_2024-Update
HORVU3Hr1G068650.8	No alias	subfamily ABCB transporter	0.02	Orthogroups_2024-Update
LOC_Os01g34970	No alias	MDR-like ABC transporter, putative, expressed	0.02	Orthogroups_2024-Update
MA_10432169g0010	No alias	(at2g47000 : 1463.0) Multidrug resistance ...	0.03	Orthogroups_2024-Update
Potri.001G417600	No alias	ABC transporter family protein	0.03	Orthogroups_2024-Update
Potri.002G187400	No alias	P-glycoprotein 11	0.03	Orthogroups_2024-Update
Potri.008G050400	No alias	P-glycoprotein 20	0.03	Orthogroups_2024-Update
Potri.010G003000	No alias	ATP binding cassette subfamily B4	0.03	Orthogroups_2024-Update
Potri.011G133800	No alias	P-glycoprotein 18	0.03	Orthogroups_2024-Update
Seita.5G031800.1	No alias	subfamily ABCB transporter	0.02	Orthogroups_2024-Update
Seita.5G189700.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
Solyc03g093650	No alias	ABC transporter B family protein (AHRD V3.3 *** A0A072UBK0_MEDTR)	0.03	Orthogroups_2024-Update
Sopen03g001870	No alias	ABC transporter transmembrane region	0.04	Orthogroups_2024-Update
Sopen09g003060	No alias	ABC transporter transmembrane region	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Predicted GO
MF	GO:0004252	serine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004615	phosphomannomutase activity	IEP	Predicted GO
MF	GO:0005096	GTPase activator activity	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0006497	protein lipidation	IEP	Predicted GO
BP	GO:0006505	GPI anchor metabolic process	IEP	Predicted GO
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Predicted GO
BP	GO:0006508	proteolysis	IEP	Predicted GO
BP	GO:0006643	membrane lipid metabolic process	IEP	Predicted GO
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Predicted GO
BP	GO:0006664	glycolipid metabolic process	IEP	Predicted GO
MF	GO:0008047	enzyme activator activity	IEP	Predicted GO
MF	GO:0008233	peptidase activity	IEP	Predicted GO
BP	GO:0008654	phospholipid biosynthetic process	IEP	Predicted GO
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Predicted GO
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Predicted GO
BP	GO:0009247	glycolipid biosynthetic process	IEP	Predicted GO
BP	GO:0009298	GDP-mannose biosynthetic process	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
BP	GO:0019673	GDP-mannose metabolic process	IEP	Predicted GO
CC	GO:0044432	endoplasmic reticulum part	IEP	Predicted GO
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Predicted GO
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Predicted GO
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Predicted GO
BP	GO:1903509	liposaccharide metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	62	336
IPR011527	ABC1_TM_dom	714	981
IPR003439	ABC_transporter-like	404	552
IPR003439	ABC_transporter-like	1054	1209

External Links

No external refs found!

Solyc12g098840

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation