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  5. evm.model.contig_2084.4

evm.model.contig_2084.4


Description : (at3g49660 : 178.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 118516 Blast hits to 43755 proteins in 1024 species: Archae - 92; Bacteria - 12360; Metazoa - 47439; Fungi - 25856; Plants - 15887; Viruses - 9; Other Eukaryotes - 16873 (source: NCBI BLink). & (p93107|pf20_chlre : 150.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 356.0) & (original description: no original description)


Gene families : OG_42_0001711 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001711_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2084.4
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Pp1s165_60V6 No alias wd repeat domain 5 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003951 NAD+ kinase activity IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006741 NADP biosynthetic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008531 riboflavin kinase activity IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019211 phosphatase activator activity IEP Predicted GO
CC GO:0030915 Smc5-Smc6 complex IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
CC GO:0106068 SUMO ligase complex IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 6 39
IPR001680 WD40_repeat 171 217
IPR001680 WD40_repeat 127 165
IPR001680 WD40_repeat 222 259
IPR001680 WD40_repeat 263 301
IPR001680 WD40_repeat 43 81
IPR001680 WD40_repeat 85 123
No external refs found!