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- Porphyridium purpureum
- Sequence
- evm.model.contig_2114.4
evm.model.contig_2114.4
Description : (at3g08530 : 1191.0) Clathrin, heavy chain; FUNCTIONS IN: structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Clathrin, heavy chain (InterPro:IPR016341), Clathrin, heavy chain, linker/propeller domain (InterPro:IPR016025), Tetratricopeptide-like helical (InterPro:IPR011990), Clathrin, heavy chain, propeller, N-terminal (InterPro:IPR001473), Clathrin, heavy chain, linker, core motif (InterPro:IPR015348), Clathrin, heavy chain, propeller repeat (InterPro:IPR022365), Armadillo-type fold (InterPro:IPR016024), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); BEST Arabidopsis thaliana protein match is: Clathrin, heavy chain (TAIR:AT3G11130.1); Has 1511 Blast hits to 1401 proteins in 489 species: Archae - 2; Bacteria - 31; Metazoa - 879; Fungi - 167; Plants - 128; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). & (reliability: 2382.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Porphyridium release: evm.model.contig_2114.4 | |
| Cluster | HCCA clusters: Cluster_47 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| Potri.008G070600 | No alias | Clathrin, heavy chain | 0.02 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| BP | GO:0006810 | transport | None | Extended |
| BP | GO:0006886 | intracellular protein transport | IEA | InterProScan predictions |
| BP | GO:0008104 | protein localization | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0015031 | protein transport | None | Extended |
| BP | GO:0015833 | peptide transport | None | Extended |
| BP | GO:0016192 | vesicle-mediated transport | IEA | InterProScan predictions |
| BP | GO:0033036 | macromolecule localization | None | Extended |
| BP | GO:0042886 | amide transport | None | Extended |
| BP | GO:0045184 | establishment of protein localization | None | Extended |
| BP | GO:0046907 | intracellular transport | None | Extended |
| BP | GO:0051179 | localization | None | Extended |
| BP | GO:0051234 | establishment of localization | None | Extended |
| BP | GO:0051641 | cellular localization | None | Extended |
| BP | GO:0051649 | establishment of localization in cell | None | Extended |
| BP | GO:0071702 | organic substance transport | None | Extended |
| BP | GO:0071705 | nitrogen compound transport | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| BP | GO:0006457 | protein folding | IEP | Predicted GO |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
| MF | GO:0016887 | ATPase activity | IEP | Predicted GO |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR000547 | Clathrin_H-chain/VPS_repeat | 1034 | 1177 |
| IPR000547 | Clathrin_H-chain/VPS_repeat | 572 | 679 |
| IPR000547 | Clathrin_H-chain/VPS_repeat | 886 | 1022 |
| IPR000547 | Clathrin_H-chain/VPS_repeat | 1525 | 1643 |
| IPR000547 | Clathrin_H-chain/VPS_repeat | 762 | 873 |
| IPR000547 | Clathrin_H-chain/VPS_repeat | 1341 | 1482 |
| IPR000547 | Clathrin_H-chain/VPS_repeat | 1190 | 1332 |
| IPR022365 | Clathrin_H-chain_propeller_rpt | 154 | 192 |
