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  5. evm.model.contig_2118.10

evm.model.contig_2118.10


Description : (at1g08540 : 233.0) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.; RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink). & (reliability: 466.0) & (original description: no original description)


Gene families : OG_42_0001174 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001174_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2118.10
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
At2g36990 No alias RNA polymerase sigma factor sigF, chloroplastic... 0.01 Orthogroups_2024-Update
Glyma.14G145200 No alias RNApolymerase sigma-subunit C 0.01 Orthogroups_2024-Update
Glyma.19G183100 No alias RNApolymerase sigma-subunit F 0.01 Orthogroups_2024-Update
Seita.9G461200.1 No alias basal Sigma-type transcription factor 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0016987 sigma factor activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 327 395
IPR007630 RNA_pol_sigma70_r4 496 547
IPR007624 RNA_pol_sigma70_r3 405 479
IPR009042 RNA_pol_sigma70_r1_2 248 276
No external refs found!