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  5. evm.model.contig_2126.5

evm.model.contig_2126.5


Description : (at2g01730 : 140.0) a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo; cleavage and polyadenylation specificity factor 73 kDa subunit-II (CPSF73-II); CONTAINS InterPro DOMAIN/s: RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-Casp domain (InterPro:IPR022712), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73-I (TAIR:AT1G61010.3); Has 5072 Blast hits to 5039 proteins in 1435 species: Archae - 491; Bacteria - 2753; Metazoa - 569; Fungi - 259; Plants - 193; Viruses - 0; Other Eukaryotes - 807 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description)


Gene families : OG_42_0144036 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2126.5
Cluster HCCA clusters: Cluster_27


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003756 protein disulfide isomerase activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 51 224
IPR011108 RMMBL 409 458
IPR022712 Beta_Casp 293 389
No external refs found!