1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. evm.model.contig_2159.3

evm.model.contig_2159.3


Description : (at1g24320 : 268.0) Six-hairpin glycosidases superfamily protein; FUNCTIONS IN: mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity; INVOLVED IN: oligosaccharide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: glucosidase 1 (TAIR:AT1G67490.1); Has 471 Blast hits to 459 proteins in 200 species: Archae - 2; Bacteria - 99; Metazoa - 113; Fungi - 132; Plants - 45; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). & (reliability: 532.0) & (original description: no original description)


Gene families : OG_42_0005176 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005176_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2159.3
Cluster HCCA clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
165919 No alias glucosidase 1 0.01 Orthogroups_2024-Update
A4A49_30479 No alias mannosyl-oligosaccharide glucosidase gcs1 0.03 Orthogroups_2024-Update
Glyma.05G146400 No alias glucosidase 1 0.01 Orthogroups_2024-Update
Pp1s11_175V6 No alias alpha-glucosidase i 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR031631 Glyco_hydro_63N 37 195
IPR031335 Glyco_hydro_63_C 706 853
IPR031335 Glyco_hydro_63_C 351 687
No external refs found!