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  5. evm.model.contig_2286.21

evm.model.contig_2286.21


Description : (at1g56450 : 200.0) 20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds; 20S proteasome beta subunit G1 (PBG1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, cytosolic ribosome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome endopeptidase complex, beta subunit (InterPro:IPR016295), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT4G31300.2); Has 2530 Blast hits to 2530 proteins in 413 species: Archae - 597; Bacteria - 46; Metazoa - 632; Fungi - 578; Plants - 277; Viruses - 0; Other Eukaryotes - 400 (source: NCBI BLink). & (reliability: 400.0) & (original description: no original description)


Gene families : OG_42_0005152 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005152_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2286.21
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
A4A49_38474 No alias proteasome subunit beta type-4 0.01 Orthogroups_2024-Update
Bradi4g35156 No alias 20S proteasome beta subunit G1 0.05 Orthogroups_2024-Update
Brara.A02272.1 No alias beta-type-7 component *(PBG) of 26S proteasome 0.02 Orthogroups_2024-Update
Cre06.g280850 No alias 20S proteasome beta subunit G1 0.01 Orthogroups_2024-Update
HORVU4Hr1G017540.4 No alias beta-type-7 component *(PBG) of 26S proteasome 0.03 Orthogroups_2024-Update
HORVU5Hr1G078810.1 No alias beta-type-7 component *(PBG) of 26S proteasome 0.02 Orthogroups_2024-Update
Potri.006G242000 No alias 20S proteasome beta subunit G1 0.03 Orthogroups_2024-Update
Potri.018G037700 No alias 20S proteasome beta subunit G1 0.03 Orthogroups_2024-Update
Seita.2G272500.1 No alias beta-type-7 component *(PBG) of 26S proteasome 0.07 Orthogroups_2024-Update
evm.model.tig00000808.43 No alias (at1g56450 : 253.0) 20S proteasome beta subunit PBG1... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA InterProScan predictions
CC GO:0005839 proteasome core complex IEA InterProScan predictions
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 29 210
No external refs found!