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  5. evm.model.contig_2306.3

evm.model.contig_2306.3


Description : (p46225|tpic_secce : 302.0) Triosephosphate isomerase, chloroplast precursor (EC 5.3.1.1) (TIM) (Triose-phosphate isomerase) - Secale cereale (Rye) & (at2g21170 : 281.0) Encodes a plastidic triose phosphate isomerase. Mutants with reduced pdTPI levels have difficulty transitioning from heterotrophic to autotrophic growth. The related phenotypes, such as chlorosis in light-grown seedlings may result from an accumulation of dihydroxyacetone phosphate (DHAP) and methylglyoxal (MG) in these mutants. Both splice variants appear to be expressed, but the At2g21170.2 variant appears to have a much narrower expression range limited to roots.; triosephosphate isomerase (TIM); FUNCTIONS IN: triose-phosphate isomerase activity; INVOLVED IN: in 7 processes; LOCATED IN: thylakoid, mitochondrion, apoplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Triosephosphate isomerase, active site (InterPro:IPR020861), Aldolase-type TIM barrel (InterPro:IPR013785), Triosephosphate isomerase (InterPro:IPR000652); BEST Arabidopsis thaliana protein match is: triosephosphate isomerase (TAIR:AT3G55440.1); Has 11527 Blast hits to 11525 proteins in 3623 species: Archae - 144; Bacteria - 6185; Metazoa - 1204; Fungi - 240; Plants - 472; Viruses - 0; Other Eukaryotes - 3282 (source: NCBI BLink). & (reliability: 562.0) & (original description: no original description)


Gene families : OG_42_0001246 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2306.3
Cluster HCCA clusters: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
At2g21170 No alias TIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28] 0.02 Orthogroups_2024-Update
Bradi4g36310 No alias triosephosphate isomerase 0.01 Orthogroups_2024-Update
Glyma.13G336200 No alias triosephosphate isomerase 0.03 Orthogroups_2024-Update
Glyma.15G038100 No alias triosephosphate isomerase 0.03 Orthogroups_2024-Update
PSME_00021368-RA No alias (at2g21170 : 197.0) Encodes a plastidic triose phosphate... 0.01 Orthogroups_2024-Update
Potri.004G168000 No alias triosephosphate isomerase 0.03 Orthogroups_2024-Update
Potri.008G056300 No alias triosephosphate isomerase 0.01 Orthogroups_2024-Update
Potri.009G031200 No alias triosephosphate isomerase 0.01 Orthogroups_2024-Update
Pp1s38_15V6 No alias triosephosphate isomerase 0.01 Orthogroups_2024-Update
Pp1s61_72V6 No alias triosephosphate isomerase 0.01 Orthogroups_2024-Update
Sobic.002G277100.1 No alias triosephosphate isomerase & triosephosphate isomerase &... 0.03 Orthogroups_2024-Update
Solyc10g054870 No alias triosephosphate isomerase (AHRD V3.3 *** AT2G21170.3) 0.02 Orthogroups_2024-Update
Sopen01g053180 No alias Triosephosphate isomerase 0.02 Orthogroups_2024-Update
evm.model.tig00001600.10 No alias (p46225|tpic_secce : 277.0) Triosephosphate isomerase,... 0.03 Orthogroups_2024-Update
evm.model.tig00021070.120 No alias (p46226|tpis_secce : 157.0) Triosephosphate isomerase,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004807 triose-phosphate isomerase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Predicted GO
MF GO:0003997 acyl-CoA oxidase activity IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006493 protein O-linked glycosylation IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006635 fatty acid beta-oxidation IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006817 phosphate ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0009062 fatty acid catabolic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
BP GO:0019395 fatty acid oxidation IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0032006 regulation of TOR signaling IEP Predicted GO
BP GO:0032787 monocarboxylic acid metabolic process IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0034440 lipid oxidation IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0044242 cellular lipid catabolic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:0072329 monocarboxylic acid catabolic process IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
BP GO:1902600 proton transmembrane transport IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000652 Triosephosphate_isomerase 6 246
No external refs found!