evm.model.contig_2498.2

Description : no hits & (original description: no original description)

Gene families : OG_42_0001127 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_2498.2
Cluster	HCCA clusters: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
Sopen00g001750	No alias	Aspartyl protease	0.02	Orthogroups_2024-Update
Sopen06g015340	No alias	Retrotransposon gag protein	0.01	Orthogroups_2024-Update
Sopen07g008700	No alias	Retrotransposon gag protein	0.02	Orthogroups_2024-Update
Sopen07g011820	No alias	Aspartyl protease	0.02	Orthogroups_2024-Update
Sopen08g012560	No alias	Retrotransposon gag protein	0.01	Orthogroups_2024-Update
Sopen12g015060	No alias	Retrotransposon gag protein	0.03	Orthogroups_2024-Update
Sopen12g023320	No alias	Retrotransposon gag protein	0.03	Orthogroups_2024-Update
Sopen12g027350	No alias	Retrotransposon gag protein	0.02	Orthogroups_2024-Update
evm.model.contig_3711.2	No alias	no hits & (original description: no original description)	0.08	Orthogroups_2024-Update
evm.model.contig_3776.1	No alias	no hits & (original description: no original description)	0.05	Orthogroups_2024-Update
evm.model.contig_3777.1	No alias	no hits & (original description: no original description)	0.09	Orthogroups_2024-Update
evm.model.contig_4579.1	No alias	no hits & (original description: no original description)	0.09	Orthogroups_2024-Update
evm.model.contig_4586.1	No alias	no hits & (original description: no original description)	0.07	Orthogroups_2024-Update
evm.model.contig_4650.1	No alias	no hits & (original description: no original description)	0.09	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005162	Retrotrans_gag_dom	57	146
IPR001878	Znf_CCHC	218	234

External Links

No external refs found!