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  5. evm.model.contig_3386.1

evm.model.contig_3386.1


Description : (at2g32600 : 232.0) hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, intracellular, spliceosomal complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 18078 Blast hits to 8181 proteins in 576 species: Archae - 26; Bacteria - 1885; Metazoa - 7255; Fungi - 1800; Plants - 3678; Viruses - 906; Other Eukaryotes - 2528 (source: NCBI BLink). & (reliability: 464.0) & (original description: no original description)


Gene families : OG_42_0005802 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005802_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_3386.1
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Sobic.001G428400.1 No alias component *(SF3A2) of splicing factor 3A complex 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR031781 SF3A2_dom 119 213
No external refs found!