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  5. evm.model.contig_3394.2

evm.model.contig_3394.2


Description : no hits & (original description: no original description)


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_3394.2
Cluster HCCA clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
At3g19950 No alias RING/U-box superfamily protein... 0.02 Orthogroups_2024-Update
At3g56580 No alias E3 ubiquitin-protein ligase RZF1... 0.02 Orthogroups_2024-Update
At3g60080 No alias At3g60080 [Source:UniProtKB/TrEMBL;Acc:Q9M1D5] 0.02 Orthogroups_2024-Update
Brara.H02157.1 No alias E3 ubiquitin ligase *(SNIPER) 0.03 Orthogroups_2024-Update
GRMZM2G021480 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Glyma.20G149700 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Kfl00113_0130 kfl00113_0130_v1.1 (at5g20910 : 134.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
PSME_00026521-RA No alias (at3g19950 : 152.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00035855-RA No alias (at5g01980 : 155.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00054449-RA No alias (at2g40830 : 144.0) Encodes a putative RING-H2 finger... 0.02 Orthogroups_2024-Update
Seita.6G176300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen05g014700 No alias Ring finger domain 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003964 RNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 229 276
No external refs found!