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  5. evm.model.contig_3402.3

evm.model.contig_3402.3


Description : (at5g43010 : 595.0) 26S proteasome AAA-ATPase subunit RPT4a (RPT4a) mRNA,; regulatory particle triple-A ATPase 4A (RPT4A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q41365|prs7_spiol : 325.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Spinacia oleracea (Spinach) & (reliability: 1190.0) & (original description: no original description)


Gene families : OG_42_0002597 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_3402.3
Cluster HCCA clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
At1g45000 No alias 26S proteasome regulatory subunit S10B homolog B... 0.02 Orthogroups_2024-Update
At5g43010 No alias 26S proteasome regulatory subunit 10B homolog A... 0.02 Orthogroups_2024-Update
Brara.B02489.1 No alias regulatory component *(RPT4) of 26S proteasome 0.03 Orthogroups_2024-Update
Cre17.g710150 No alias AAA-type ATPase family protein 0.1 Orthogroups_2024-Update
Glyma.06G029400 No alias regulatory particle triple-A ATPase 4A 0.02 Orthogroups_2024-Update
Glyma.17G253600 No alias regulatory particle triple-A ATPase 4A 0.05 Orthogroups_2024-Update
HORVU7Hr1G090380.1 No alias regulatory component *(RPT4) of 26S proteasome 0.02 Orthogroups_2024-Update
Mp7g14270.1 No alias regulatory component RPT4 of 26S proteasome 0.02 Orthogroups_2024-Update
Potri.004G158600 No alias AAA-type ATPase family protein 0.03 Orthogroups_2024-Update
Potri.005G231700 No alias AAA-type ATPase family protein 0.02 Orthogroups_2024-Update
Potri.009G120500 No alias regulatory particle triple-A ATPase 4A 0.02 Orthogroups_2024-Update
Pp1s47_46V6 No alias 26s protease regulatory subunit 0.02 Orthogroups_2024-Update
Seita.1G046000.1 No alias regulatory component *(RPT4) of 26S proteasome 0.07 Orthogroups_2024-Update
Sobic.004G082900.1 No alias regulatory component *(RPT4) of 26S proteasome 0.04 Orthogroups_2024-Update
evm.model.tig00000718.6 No alias (at1g45000 : 537.0) AAA-type ATPase family protein;... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032501 Prot_ATP_ID_OB 67 114
IPR003959 ATPase_AAA_core 173 306
No external refs found!