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  5. Sopen01g008760

Sopen01g008760


Description : Retrotransposon gag protein


Gene families : OG_42_0001069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001069_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g008760
Cluster HCCA clusters: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Sopen02g007740 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen07g016490 No alias Retrotransposon gag protein 0.01 Orthogroups_2024-Update
Sopen11g017970 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update
Sopen12g012830 No alias Retrotransposon gag protein 0.01 Orthogroups_2024-Update
Sopen12g021880 No alias Integrase core domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 184 270
No external refs found!