evm.model.contig_3451.10

Description : (at3g18600 : 515.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G65900.1); Has 44310 Blast hits to 43105 proteins in 3082 species: Archae - 753; Bacteria - 22440; Metazoa - 6214; Fungi - 4682; Plants - 2500; Viruses - 12; Other Eukaryotes - 7709 (source: NCBI BLink). & (p46942|db10_nicsy : 185.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 1030.0) & (original description: no original description)

Gene families : OG_42_0000879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000879_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_3451.10
Cluster	HCCA clusters: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g39180	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.01	Orthogroups_2024-Update
Bradi4g41160	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.01	Orthogroups_2024-Update
Brara.E02336.1	No alias	regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway	0.01	Orthogroups_2024-Update
Cre03.g156150	No alias	DEA(D/H)-box RNA helicase family protein	0.03	Orthogroups_2024-Update
Cre07.g314900	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Orthogroups_2024-Update
Glyma.02G290500	No alias	DEA(D/H)-box RNA helicase family protein	0.02	Orthogroups_2024-Update
Glyma.17G123300	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Orthogroups_2024-Update
LOC_Os03g58810	No alias	DEAD-box ATP-dependent RNA helicase, putative, expressed	0.01	Orthogroups_2024-Update
Potri.001G250700	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.01	Orthogroups_2024-Update
Potri.001G423300	No alias	DEA(D/H)-box RNA helicase family protein	0.02	Orthogroups_2024-Update
Potri.009G045300	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.01	Orthogroups_2024-Update
Seita.2G332500.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.001G051500.1	No alias	regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway	0.02	Orthogroups_2024-Update
Solyc03g114370	No alias	RNA helicase DEAD13	0.03	Orthogroups_2024-Update
Solyc07g064520	No alias	RNA helicase DEAD24	0.04	Orthogroups_2024-Update
Sopen03g033470	No alias	DEAD/DEAH box helicase	0.04	Orthogroups_2024-Update
evm.model.tig00000441.11	No alias	(at3g18600 : 300.0) P-loop containing nucleoside...	0.02	Orthogroups_2024-Update
evm.model.tig00000441.12	No alias	(at5g65900 : 171.0) DEA(D/H)-box RNA helicase family...	0.02	Orthogroups_2024-Update
evm.model.tig00000615.43	No alias	(at2g40700 : 189.0) P-loop containing nucleoside...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
BP	GO:0002097	tRNA wobble base modification	IEP	Predicted GO
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predicted GO
MF	GO:0004749	ribose phosphate diphosphokinase activity	IEP	Predicted GO
BP	GO:0006338	chromatin remodeling	IEP	Predicted GO
BP	GO:0007049	cell cycle	IEP	Predicted GO
BP	GO:0008612	peptidyl-lysine modification to peptidyl-hypusine	IEP	Predicted GO
MF	GO:0016778	diphosphotransferase activity	IEP	Predicted GO
BP	GO:0018205	peptidyl-lysine modification	IEP	Predicted GO
BP	GO:0022414	reproductive process	IEP	Predicted GO
BP	GO:0034227	tRNA thio-modification	IEP	Predicted GO
BP	GO:0051321	meiotic cell cycle	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	221	323
IPR025313	DUF4217	365	425
IPR011545	DEAD/DEAH_box_helicase_dom	7	178

External Links

No external refs found!

evm.model.contig_3451.10

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation