1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. evm.model.contig_3474.1

evm.model.contig_3474.1


Description : no hits & (original description: no original description)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_3474.1
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g61190 No alias retrotransposon protein, putative, unclassified, expressed 0.01 Orthogroups_2024-Update
LOC_Os06g19350 No alias retrotransposon, putative, centromere-specific, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g16480 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.01 Orthogroups_2024-Update
LOC_Os10g40400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc08g061440 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g015430 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen01g024770 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen01g025930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen03g013940 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen04g007630 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.01 Orthogroups_2024-Update
Sopen05g023200 No alias Retroviral aspartyl protease 0.01 Orthogroups_2024-Update
Sopen06g009540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen06g010330 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen08g020120 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g008020 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g021290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen11g025280 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen12g010440 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen12g011940 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen12g021520 No alias Integrase core domain 0.02 Orthogroups_2024-Update
evm.model.contig_2215.2 No alias (original description: no original description) 0.07 Orthogroups_2024-Update
evm.model.contig_2498.1 No alias (p31843|rrpo_oenbe : 132.0) RNA-directed DNA polymerase... 0.07 Orthogroups_2024-Update
evm.model.contig_3413.7 No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
evm.model.contig_3493.3 No alias no hits & (original description: no original description) 0.12 Orthogroups_2024-Update
evm.model.contig_3758.2 No alias no hits & (original description: no original description) 0.07 Orthogroups_2024-Update
evm.model.contig_3759.1 No alias no hits & (original description: no original description) 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 262 422
IPR001584 Integrase_cat-core 856 966
No external refs found!