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  5. evm.model.contig_3758.2

evm.model.contig_3758.2


Description : no hits & (original description: no original description)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_3758.2
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G007530.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc10g054430 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g008200 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen01g025930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen02g004560 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen04g007630 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.02 Orthogroups_2024-Update
Sopen06g009540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen08g020120 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g021770 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen11g021290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen11g022720 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen11g025280 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen12g011100 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen12g011940 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen12g021520 No alias Integrase core domain 0.03 Orthogroups_2024-Update
evm.model.contig_2215.2 No alias (original description: no original description) 0.17 Orthogroups_2024-Update
evm.model.contig_3474.1 No alias no hits & (original description: no original description) 0.07 Orthogroups_2024-Update
evm.model.contig_3493.3 No alias no hits & (original description: no original description) 0.1 Orthogroups_2024-Update
evm.model.contig_3759.1 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0015074 DNA integration IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000477 RT_dom 254 413
No external refs found!