evm.model.contig_4404.18

Description : (at4g14800 : 211.0) Encodes 20S proteasome beta subunit PBD2 (PBD2).; 20S proteasome beta subunit D2 (PBD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit D1 (TAIR:AT3G22630.1). & (q9lst6|psb2_orysa : 200.0) Proteasome subunit beta type 2 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit beta-4) - Oryza sativa (Rice) & (reliability: 422.0) & (original description: no original description)

Gene families : OG_42_0004359 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004359_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_4404.18
Cluster	HCCA clusters: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
Brara.E01413.1	No alias	beta-type-4 component *(PBD) of 26S proteasome	0.02	Orthogroups_2024-Update
Cre14.g610950	No alias	20S proteasome beta subunit D2	0.03	Orthogroups_2024-Update
MA_119122g0010	No alias	(at4g14800 : 176.0) Encodes 20S proteasome beta subunit...	0.03	Orthogroups_2024-Update
Potri.008G155500	No alias	20S proteasome beta subunit D1	0.03	Orthogroups_2024-Update
Pp1s50_46V6	No alias	proteasome subunit beta type 2	0.02	Orthogroups_2024-Update
Seita.9G129900.1	No alias	beta-type-4 component *(PBD) of 26S proteasome	0.03	Orthogroups_2024-Update
Sobic.001G128400.1	No alias	beta-type-4 component *(PBD) of 26S proteasome	0.03	Orthogroups_2024-Update
evm.model.tig00020554.80	No alias	(at4g14800 : 210.0) Encodes 20S proteasome beta subunit...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004298	threonine-type endopeptidase activity	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	InterProScan predictions
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEA	InterProScan predictions
MF	GO:0070003	threonine-type peptidase activity	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0009056	catabolic process	IEP	Predicted GO
BP	GO:0009057	macromolecule catabolic process	IEP	Predicted GO
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Predicted GO
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predicted GO
BP	GO:0044248	cellular catabolic process	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predicted GO
BP	GO:1901575	organic substance catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	3	172

External Links

No external refs found!

evm.model.contig_4404.18

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation