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  5. evm.model.contig_4469.3

evm.model.contig_4469.3


Description : (at5g61140 : 1009.0) Encodes a predicted protein with 30% identity with MER3/RCK.; U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2). & (reliability: 2018.0) & (original description: no original description)


Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_4469.3
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
178863 No alias U5 small nuclear ribonucleoprotein helicase 0.02 Orthogroups_2024-Update
410613 No alias U5 small nuclear ribonucleoprotein helicase 0.03 Orthogroups_2024-Update
A4A49_03610 No alias dexh-box atp-dependent rna helicase dexh14 0.02 Orthogroups_2024-Update
Kfl00417_0080 kfl00417_0080_v1.1 (at5g61140 : 2262.0) Encodes a predicted protein with... 0.02 Orthogroups_2024-Update
PSME_00000757-RA No alias (at5g61140 : 756.0) Encodes a predicted protein with 30%... 0.01 Orthogroups_2024-Update
evm.model.contig_4401.1 No alias (at3g27730 : 193.0) DNA helicase required for... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006814 sodium ion transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 1199 1368
IPR004179 Sec63-dom 1777 2025
IPR011545 DEAD/DEAH_box_helicase_dom 309 489
IPR004179 Sec63-dom 828 1151
No external refs found!