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  5. evm.model.contig_4488.3

evm.model.contig_4488.3


Description : (at2g20690 : 201.0) A synthetic gene encoding the catalytic domain of the Arabidopsis thaliana gene At2g20690 was recombinant expressed in E. coli demonstrating the molecular function of riboflavin synthase.; lumazine-binding family protein; FUNCTIONS IN: binding, riboflavin synthase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Lumazine-binding protein (InterPro:IPR001783); Has 6777 Blast hits to 6682 proteins in 2207 species: Archae - 44; Bacteria - 4232; Metazoa - 1; Fungi - 143; Plants - 41; Viruses - 0; Other Eukaryotes - 2316 (source: NCBI BLink). & (reliability: 402.0) & (original description: no original description)


Gene families : OG_42_0006550 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006550_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_4488.3
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
96865 No alias lumazine-binding family protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR026017 Lumazine-bd_dom 200 285
IPR026017 Lumazine-bd_dom 99 186
No external refs found!