evm.model.contig_4562.1

Description : (at4g25730 : 353.0) FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, rRNA processing, rRNA methylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spb1, C-terminal (InterPro:IPR012920), Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G01230.1); Has 30028 Blast hits to 21157 proteins in 1975 species: Archae - 200; Bacteria - 7297; Metazoa - 8731; Fungi - 3085; Plants - 939; Viruses - 236; Other Eukaryotes - 9540 (source: NCBI BLink). & (reliability: 706.0) & (original description: no original description)

Gene families : OG_42_0003815 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003815_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_4562.1
Cluster	HCCA clusters: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
At4g25730	No alias	Putative rRNA methyltransferase...	0.07	Orthogroups_2024-Update
Bradi2g16130	No alias	FtsJ-like methyltransferase family protein	0.11	Orthogroups_2024-Update
Brara.K00179.1	No alias	MRM2-type rRNA methyltransferase	0.08	Orthogroups_2024-Update
Cre12.g529500	No alias	FtsJ-like methyltransferase family protein	0.13	Orthogroups_2024-Update
Glyma.11G116800	No alias	FtsJ-like methyltransferase family protein	0.05	Orthogroups_2024-Update
Kfl00895_0010	kfl00895_0010_v1.1	(at4g25730 : 357.0) FtsJ-like methyltransferase family...	0.07	Orthogroups_2024-Update
LOC_Os05g49230	No alias	ribosomal RNA large subunit methyltransferase J,...	0.01	Orthogroups_2024-Update
Mp8g14990.1	No alias	no hits & (original description: none)	0.02	Orthogroups_2024-Update
PSME_00010519-RA	No alias	(at4g25730 : 721.0) FtsJ-like methyltransferase family...	0.02	Orthogroups_2024-Update
Potri.009G118400	No alias	FtsJ-like methyltransferase family protein	0.02	Orthogroups_2024-Update
Pp1s22_254V6	No alias	rrna methyltransferase	0.07	Orthogroups_2024-Update
Seita.3G143200.1	No alias	MRM2-type rRNA methyltransferase	0.06	Orthogroups_2024-Update
Sobic.009G235200.1	No alias	MRM2-type rRNA methyltransferase	0.1	Orthogroups_2024-Update
Solyc11g020810	No alias	FtsJ-like methyltransferase family protein (AHRD V3.3...	0.01	Orthogroups_2024-Update
Solyc11g020820	No alias	FtsJ-like methyltransferase family protein (AHRD V3.3...	0.02	Orthogroups_2024-Update
Sopen10g016730	No alias	FtsJ-like methyltransferase	0.08	Orthogroups_2024-Update
Sopen11g010770	No alias	FtsJ-like methyltransferase	0.06	Orthogroups_2024-Update
evm.model.tig00000217.16	No alias	(at4g25730 : 263.0) FtsJ-like methyltransferase family...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	InterProScan predictions
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0032259	methylation	IEA	InterProScan predictions
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003852	2-isopropylmalate synthase activity	IEP	Predicted GO
MF	GO:0004386	helicase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006551	leucine metabolic process	IEP	Predicted GO
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predicted GO
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Predicted GO
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009098	leucine biosynthetic process	IEP	Predicted GO
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predicted GO
MF	GO:0031406	carboxylic acid binding	IEP	Predicted GO
MF	GO:0031418	L-ascorbic acid binding	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0043177	organic acid binding	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
MF	GO:0048029	monosaccharide binding	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002877	rRNA_MeTrfase_FtsJ_dom	25	219
IPR024576	rRNA_MeTfrase_Spb1_DUF3381	265	457
IPR012920	rRNA_MeTfrase_Spb1_C	704	912

External Links

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evm.model.contig_4562.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation