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  5. evm.model.contig_4579.1

evm.model.contig_4579.1


Description : no hits & (original description: no original description)


Gene families : OG_42_0001127 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_4579.1
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Sopen00g001750 No alias Aspartyl protease 0.02 Orthogroups_2024-Update
Sopen06g015340 No alias Retrotransposon gag protein 0.01 Orthogroups_2024-Update
Sopen07g008700 No alias Retrotransposon gag protein 0.02 Orthogroups_2024-Update
Sopen07g011820 No alias Aspartyl protease 0.01 Orthogroups_2024-Update
Sopen08g012560 No alias Retrotransposon gag protein 0.01 Orthogroups_2024-Update
Sopen12g015060 No alias Retrotransposon gag protein 0.02 Orthogroups_2024-Update
Sopen12g023320 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen12g027350 No alias Retrotransposon gag protein 0.02 Orthogroups_2024-Update
evm.model.contig_2322.2 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
evm.model.contig_2390.1 No alias no hits & (original description: no original description) 0.08 Orthogroups_2024-Update
evm.model.contig_2498.2 No alias no hits & (original description: no original description) 0.09 Orthogroups_2024-Update
evm.model.contig_3711.2 No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
evm.model.contig_4401.5 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
evm.model.contig_4586.1 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
evm.model.contig_4650.1 No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006313 transposition, DNA-mediated IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0015074 DNA integration IEP Predicted GO
BP GO:0032196 transposition IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 156 232
No external refs found!