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  5. evm.model.contig_483.3

evm.model.contig_483.3


Description : (at5g18620 : 838.0) chromatin remodeling factor17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), SLIDE (InterPro:IPR015195), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin-remodeling protein 11 (TAIR:AT3G06400.2); Has 25193 Blast hits to 20371 proteins in 2196 species: Archae - 142; Bacteria - 5974; Metazoa - 6066; Fungi - 4943; Plants - 1903; Viruses - 481; Other Eukaryotes - 5684 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 820.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1664.0) & (original description: no original description)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_483.3
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G387890 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
Glyma.17G023600 No alias chromatin remodeling factor17 0.02 Orthogroups_2024-Update
HORVU4Hr1G008870.18 No alias chromatin remodeling factor *(DDM1) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006338 chromatin remodeling IEA InterProScan predictions
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0051321 meiotic cell cycle IEP Predicted GO
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 495 610
IPR015195 SLIDE 916 1025
IPR000330 SNF2_N 199 473
No external refs found!