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evm.model.contig_515.2


Description : (at1g25260 : 137.0) Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G11250.1); Has 1099 Blast hits to 1097 proteins in 339 species: Archae - 116; Bacteria - 0; Metazoa - 360; Fungi - 259; Plants - 172; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink). & (reliability: 274.0) & (original description: no original description)


Gene families : OG_42_0004618 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_515.2
Cluster HCCA clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre06.g261700 No alias Ribosomal protein L10 family protein 0.01 Orthogroups_2024-Update
Kfl00047_0030 kfl00047_0030_v1.1 (at1g25260 : 244.0) Ribosomal protein L10 family... 0.04 Orthogroups_2024-Update
LOC_Os12g01430 No alias ribosomal protein L10, putative, expressed 0.02 Orthogroups_2024-Update
Potri.001G460100 No alias Ribosomal protein L10 family protein 0.01 Orthogroups_2024-Update
Potri.011G156300 No alias Ribosomal protein L10 family protein 0.01 Orthogroups_2024-Update
Pp1s138_84V6 No alias F4F7.35; acidic ribosomal protein P0-related... 0.01 Orthogroups_2024-Update
Pp1s431_4V6 No alias F4F7.35; acidic ribosomal protein P0-related... 0.02 Orthogroups_2024-Update
Sobic.005G003800.1 No alias pre-60S ribosomal-subunit proteome nuclear export factor *(MRT4) 0.04 Orthogroups_2024-Update
Sobic.008G004000.1 No alias pre-60S ribosomal-subunit proteome nuclear export factor *(MRT4) 0.02 Orthogroups_2024-Update
Solyc01g104470 No alias Acidic ribosomal protein P0 (AHRD V3.3 *** B9I0W5_POPTR) 0.02 Orthogroups_2024-Update
Sopen01g046970 No alias hypothetical protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA InterProScan predictions
BP GO:0042254 ribosome biogenesis IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003852 2-isopropylmalate synthase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006551 leucine metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009098 leucine biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 2 94
No external refs found!