evm.model.contig_575.4

Description : (q9lst7|psb3_orysa : 259.0) Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3) - Oryza sativa (Rice) & (at1g21720 : 256.0) 20S proteasome beta subunit PBC1 truncated protein (PBC1); proteasome beta subunit C1 (PBC1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit C2 (TAIR:AT1G77440.2); Has 3309 Blast hits to 3309 proteins in 436 species: Archae - 498; Bacteria - 34; Metazoa - 1257; Fungi - 828; Plants - 282; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink). & (reliability: 512.0) & (original description: no original description)

Gene families : OG_42_0002994 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002994_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_575.4
Cluster	HCCA clusters: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method
Cre06.g267500	No alias	20S proteasome beta subunit C2	0.02	Orthogroups_2024-Update
GRMZM2G117544	No alias	proteasome beta subunit C1	0.01	Orthogroups_2024-Update
LOC_Os02g08520	No alias	peptidase, T1 family, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os06g43570	No alias	peptidase, T1 family, putative, expressed	0.02	Orthogroups_2024-Update
Mp7g15370.1	No alias	component beta type-3 of 26S proteasome	0.01	Orthogroups_2024-Update
PSME_00035131-RA	No alias	(at1g21720 : 355.0) 20S proteasome beta subunit PBC1...	0.01	Orthogroups_2024-Update
Potri.002G080800	No alias	proteasome beta subunit C1	0.01	Orthogroups_2024-Update
Seita.4G202500.1	No alias	beta-type-3 component *(PBC) of 26S proteasome	0.03	Orthogroups_2024-Update
Sobic.010G204500.1	No alias	beta-type-3 component *(PBC) of 26S proteasome	0.01	Orthogroups_2024-Update
Sopen04g004540	No alias	Proteasome subunit	0.03	Orthogroups_2024-Update
evm.model.tig00000826.22	No alias	(q9lst7\|psb3_orysa : 263.0) Proteasome subunit beta type...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004298	threonine-type endopeptidase activity	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	InterProScan predictions
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEA	InterProScan predictions
MF	GO:0070003	threonine-type peptidase activity	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0003684	damaged DNA binding	IEP	Predicted GO
BP	GO:0006289	nucleotide-excision repair	IEP	Predicted GO
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0009056	catabolic process	IEP	Predicted GO
BP	GO:0009057	macromolecule catabolic process	IEP	Predicted GO
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predicted GO
BP	GO:0016485	protein processing	IEP	Predicted GO
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Predicted GO
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0030163	protein catabolic process	IEP	Predicted GO
BP	GO:0043085	positive regulation of catalytic activity	IEP	Predicted GO
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predicted GO
BP	GO:0044093	positive regulation of molecular function	IEP	Predicted GO
BP	GO:0044248	cellular catabolic process	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predicted GO
BP	GO:0050790	regulation of catalytic activity	IEP	Predicted GO
BP	GO:0051604	protein maturation	IEP	Predicted GO
BP	GO:0065009	regulation of molecular function	IEP	Predicted GO
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predicted GO
BP	GO:1901575	organic substance catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	7	189

External Links

No external refs found!

evm.model.contig_575.4

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation