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  5. Sopen01g012600

Sopen01g012600


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g012600
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.03 Orthogroups_2024-Update
Kfl00569_0100 kfl00569_0100_v1.1 (p31843|rrpo_oenbe : 135.0) RNA-directed DNA polymerase... 0.03 Orthogroups_2024-Update
Kfl00590_0100 kfl00590_0100_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os06g07400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc08g043150 No alias No description available 0.02 Orthogroups_2024-Update
Sopen00g001490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g001860 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Sopen02g018880 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen03g021380 No alias Reverse transcriptase-like 0.03 Orthogroups_2024-Update
Sopen04g009770 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen05g017540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen06g008750 No alias Retroviral aspartyl protease 0.04 Orthogroups_2024-Update
Sopen07g004930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g008450 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen11g012620 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g013220 No alias Retrotransposon gag protein 0.02 Orthogroups_2024-Update
Sopen12g011100 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g011680 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen12g011740 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen12g011860 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen12g018380 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 1283 1394
IPR005162 Retrotrans_gag_dom 204 300
IPR000477 RT_dom 741 900
No external refs found!