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  5. 101245

101245


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 101245
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AC195864.3_FG017 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g14160 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G085089 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G168378 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os08g25280 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
Potri.015G034900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Predicted GO
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005761 mitochondrial ribosome IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 283 304
IPR002885 Pentatricopeptide_repeat 48 72
IPR002885 Pentatricopeptide_repeat 211 238
IPR002885 Pentatricopeptide_repeat 183 209
IPR002885 Pentatricopeptide_repeat 107 155
No external refs found!