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  4. Sequence
  5. 105197

105197


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 105197
Cluster HCCA clusters: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
A4A49_26813 No alias putative pentatricopeptide repeat-containing protein,... 0.04 Orthogroups_2024-Update
AC195864.3_FG017 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
At1g17630 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
Brara.J01291.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K00505.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.04G158200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G029000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G024900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os08g25280 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_474261g0010 No alias (at3g12770 : 471.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00003038-RA No alias (at1g11290 : 364.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update
PSME_00016831-RA No alias (at3g12770 : 618.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00036148-RA No alias (at2g22070 : 583.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00054324-RA No alias (at3g24000 : 542.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00057163-RA No alias (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Potri.014G087100 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Pp1s446_7V6 No alias F18A5.40; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Sopen01g015270 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen01g054250 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g029160 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen10g004380 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006282 regulation of DNA repair IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0045735 nutrient reservoir activity IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
BP GO:0080135 regulation of cellular response to stress IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:2001020 regulation of response to DNA damage stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 471 492
IPR002885 Pentatricopeptide_repeat 368 390
IPR002885 Pentatricopeptide_repeat 164 189
IPR002885 Pentatricopeptide_repeat 193 223
IPR002885 Pentatricopeptide_repeat 87 134
IPR002885 Pentatricopeptide_repeat 293 333
IPR002885 Pentatricopeptide_repeat 396 440
No external refs found!