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  5. 107700

107700


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 107700
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
At3g03580 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Orthogroups_2024-Update
GRMZM2G462417 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
PSME_00013280-RA No alias (at4g33170 : 410.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00021863-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00048055-RA No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Pp1s178_15V6 No alias T1B8.1; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.1G290500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
evm.model.tig00001038.5 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
BP GO:0019915 lipid storage IEP Predicted GO
MF GO:0030674 protein binding, bridging IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0051015 actin filament binding IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 66 95
IPR002885 Pentatricopeptide_repeat 342 368
IPR002885 Pentatricopeptide_repeat 272 299
IPR002885 Pentatricopeptide_repeat 169 197
IPR002885 Pentatricopeptide_repeat 139 164
IPR002885 Pentatricopeptide_repeat 545 567
IPR002885 Pentatricopeptide_repeat 370 400
IPR002885 Pentatricopeptide_repeat 570 618
IPR002885 Pentatricopeptide_repeat 469 517
IPR032867 DYW_dom 748 868
No external refs found!