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  5. 11658

11658


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 11658
Cluster HCCA clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
16621 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
PSME_00005130-RA No alias (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... 0.02 Orthogroups_2024-Update
PSME_00010400-RA No alias (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... 0.01 Orthogroups_2024-Update
PSME_00015835-RA No alias (at4g01030 : 610.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00039409-RA No alias (at4g18750 : 537.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00056966-RA No alias (at4g13650 : 674.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Sobic.009G241200.3 No alias RNA editing factor *(ECB2/VAC1) 0.02 Orthogroups_2024-Update
Sopen06g024560 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 164 211
IPR002885 Pentatricopeptide_repeat 366 412
IPR002885 Pentatricopeptide_repeat 241 261
IPR002885 Pentatricopeptide_repeat 269 294
IPR002885 Pentatricopeptide_repeat 340 365
IPR002885 Pentatricopeptide_repeat 441 464
IPR002885 Pentatricopeptide_repeat 36 62
IPR002885 Pentatricopeptide_repeat 65 94
No external refs found!